Anthony Mathelier

Position:

Institute:

Centre for Molecular Medicine Norway, University of Oslo

Email: anthony.mathelier@ncmm.uio.no

Address: Gaustadalléen 21, 0349 Oslo

Country:

Norway

Area of Expertise:

Gene expression regulation
Transcription factor binding site
MicroRNA

Link to Research Webpage(s):

//mathelierlab.com

Link to Tool Webpage(s):

//github.com/wassermanlab/BiasAway
//cagedop.cmmt.ubc.ca/CAGEd_oPOSSUM/
//github.com/amathelier/DNAshapedTFBS
//intervene.readthedocs.io/en/latest/
//manta.cmmt.ubc.ca/cgi-bin/manta/manta.py
//cisreg.cmmt.ubc.ca/TFFM/doc/

Link to Resource Webpage(s):

//jaspar.genereg.net/
//tagc.univ-mrs.fr/remap/

Role in the COST action

Role in the Project:

WG Member

Working Group(s):

WG2

Your Role in Working Group(s):

WG2 Member

Contribution to the Project

A key aspect of this Cost Action is the inter-connection of multiple resources dedicated to the study of gene expression regulation. To achieve this goal, the scientific community needs to address the need of interoperability between the multiple existing resources. We are currently involved in the development of the ReMap database (processing and storing ChIP-seq dataset to create a catalogue of cis-regulatory regions in human) and the JASPAR database. We foresee that these resources as well as other resources related to gene regulation (such as the RSAT tools, the Eukaryotic Promoter Database, cis-Regulon) should be inter-connected to allow the scientific community to leverage the power of these multiple resources.
This COST action will strengthen existing collaborations and create new ones for the analyses of gene expression regulation (e.g. with Dr. Jacques van Helden, Dr. Benoît Ballester, Dr. Stein Aerts).

Location: