Links to Gene Regulation Knowledge Commons resources
A list of resources with information relevant for understanding and modelling Gene Regulation processes:

• TFcheckpoint: www.TFcheckpoint.org, NTNU’s effort to curate human, mouse and rat DNA binding Transcription Factors and Target Genes
• ReMap2018: remap.cisreg.eu, an integrative ChIP-seq analysis of regulatory regions
• SSB: www.semantic-systems-biology.org, Semantic Systems Biology portal
• EpiFactors: //epifactors.autosome.ru/
• HOCOMOCO: //hocomoco11.autosome.ru/, HOmo sapiens COmprehensive MOdel COllection
• ReMap: remap.cisreg.eu
• PathoYeastract: //pathoyeastract.org, Pathogenic Yeast Search for Transcriptional Regulators And Consensus Tracking
• YEASTRACT: //yeastract.com, Yeast Search for Transcriptional Regulators And Consensus Tracking
• IntAct: www.ebi.ac.uk/intact
• UniProt: www.uniprot.org
• Gene Ontology and GO Annotations: www.ebi.ac.uk/quickgo
• Complex Portal: www.ebi.ac.uk/complexportal

Links to Gene Regulation Knowledge Commons tools
A list of software tools that can be used to curate or analyse Gene Regulation information:

• SciCura: www.SciCura.org/info.html, NTNU’s initiative to build a community curation platform
• Opera House: //opera.autosome.ru, a web access to sequence motif analysis tools developed by the autosome.ru team
• MoLoTool: //molotool.autosome.ru, Transcription Factor Motif Location Toolbox
• Unified Human Interactome: //www.unihi.org
• StemChecker: //stemchecker.sysbiolab.eu
• StemCellNet: //stemcellnet.sysbiolab.eu
• CyanoEXpress: //cyanoexpress.sysbiolab.eu
• GINsim: //ginsim.org, Gene Interaction Network simulation
• EpiLog: //epilog-tool.org, Epithelium Logical modelling
• PSICQUIC: //github.com/PSICQUIC

Related Projects

• GRECO: //www.theGRECO.org, the initial global initiative to organise the construction and management of the Gene Regulation Knowledge Commons